STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM2010_50TonB-dependent siderophore receptor, putative; Pfam:pfam00593 TonB dependent receptor. (698 aa)    
Predicted Functional Partners:
AM2010_48
Pfam:pfam13703 PepSY-associated TM helix.
 
  
 0.924
AM2010_49
Hypothetical protein.
       0.807
AKM07762.1
Iron dicitrate transport regulator FecR; Pfam:pfam04773 FecR protein.
 
 
 0.733
AKM07007.1
Pfam:pfam04773 FecR protein.
 
 
 0.733
AKM06368.1
Pfam:pfam04773 FecR protein.
 
 
 0.728
AKM07878.1
Anti-FecI sigma factor, FecR; Pfam:pfam04773 FecR protein.
 
 
 0.724
AKM06353.1
Pfam:pfam00593 TonB dependent receptor.
  
     0.720
AKM07756.1
Pfam:pfam04773 FecR protein.
 
 
 0.714
AKM07766.1
Pfam:pfam04773 FecR protein.
 
 
 0.700
AKM07614.1
Pfam:pfam13703 PepSY-associated TM helix.
 
  
 0.697
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.