STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM2010_52Pfam:pfam00593 TonB dependent receptor. (750 aa)    
Predicted Functional Partners:
AM2010_51
Hypothetical protein.
 
     0.922
AKM07528.1
Pfam:pfam04773 FecR protein.
  
     0.658
AKM07736.1
Hypothetical protein.
    
 
 0.615
AM2010_44
Hypothetical protein; Pfam:pfam00565 Staphylococcal nuclease homologue.
 
 
 0.613
AKM06364.1
Pfam:pfam00593 TonB dependent receptor.
  
  
 0.593
AKM06249.1
Pfam:pfam06629 MltA-interacting protein MipA.
  
     0.579
AKM06460.1
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
  
    0.561
AM2010_48
Pfam:pfam13703 PepSY-associated TM helix.
 
    0.548
AM2010_50
TonB-dependent siderophore receptor, putative; Pfam:pfam00593 TonB dependent receptor.
  
  
 0.510
AKM07244.1
Hypothetical protein; Pfam:pfam03544 Gram-negative bacterial TonB protein C-terminal.
 
 
 0.506
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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