STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM2010_59Hypothetical protein; Pfam:pfam01594 Domain of unknown function DUF20. (391 aa)    
Predicted Functional Partners:
AM2010_60
RNA polymerase sigma-24 factor; Pfam:pfam04542 Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.732
AM2010_62
Histidine kinase; Pfam:pfam03924 CHASE domain.
 
    0.692
AM2010_61
Hypothetical protein.
       0.647
AKM08058.1
Signal transduction histidine kinase; Pfam:pfam05227 CHASE3 domain.
  
     0.468
AKM08407.1
Hypothetical protein.
 
   
 0.413
AKM07461.1
Putative permease; Pfam:pfam01594 Domain of unknown function DUF20.
 
     0.401
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.