STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM06687.1Pfam:pfam00534 Glycosyl transferases group 1. (384 aa)    
Predicted Functional Partners:
AKM07109.1
Pfam:pfam02397 Bacterial sugar transferase.
 
  
 0.851
AKM06686.1
Pfam:pfam12697 Alpha/beta hydrolase family.
  
  
 0.813
AKM06776.1
Glycoside hydrolase; Pfam:pfam00534 Glycosyl transferases group 1.
  
     0.769
AKM08695.1
Polymerase; Pfam:pfam04932 O-Antigen ligase.
 
  
 0.768
AKM07411.1
Putative exopolysaccharide biosynthesis protein.
 
  
 0.713
AKM06760.1
WalW protein.
 
     0.695
AKM08697.1
Putative glycosyltransferase; Pfam:pfam00534 Glycosyl transferases group 1.
 
     0.687
AKM07404.1
ABC transporter; Pfam:pfam09721 Transmembrane exosortase (Exosortase_EpsH).
 
   
 0.661
AKM06685.1
Hypothetical protein; Pfam:pfam02696 Uncharacterized ACR, YdiU/UPF0061 family.
   
   0.650
AKM07407.1
Polysaccharide deacetylase; Pfam:pfam11959 Domain of unknown function (DUF3473).
 
  
 0.646
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.