STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM06689.1Pyrrolo-quinoline quinone; Pfam:pfam13360 PQQ-like domain. (448 aa)    
Predicted Functional Partners:
bamA
Outer membrane protein assembly factor BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
 
 0.968
bamD
Outer membrane protein assembly factor BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
 
 0.933
AKM07823.1
Peptidyl-prolyl isomerase; Pfam:pfam00639 PPIC-type PPIASE domain.
  
 
 0.927
AKM06688.1
Hypothetical protein.
 
     0.813
AKM07812.1
TmRNA-binding small protein A; Pfam:pfam04355 SmpA / OmlA family.
  
 
 
 0.804
AKM08389.1
Hypothetical protein; Pfam:pfam12100 Domain of unknown function (DUF3576).
  
    0.757
AKM06686.1
Pfam:pfam12697 Alpha/beta hydrolase family.
 
    0.659
AKM07220.1
Peptidyl-prolyl isomerase; Pfam:pfam13145 PPIC-type PPIASE domain.
  
 
 0.622
AKM08387.1
Secreted (Periplasmic)-like protein; Pfam:pfam04390 Lipopolysaccharide-assembly.
  
     0.608
AKM07898.1
RpsU-divergently transcribed; Pfam:pfam08511 COQ9.
  
     0.577
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.