STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM06701.1Bacterial regulatory, arsR family protein; Pfam:pfam12840 Helix-turn-helix domain. (108 aa)    
Predicted Functional Partners:
AKM06702.1
Polyketide cyclase; Pfam:pfam08327 Activator of Hsp90 ATPase-like protein.
 
  
 0.950
AKM06704.1
Histidine kinase; Pfam:pfam08818 Domain of unknown function (DU1801).
 
     0.851
AKM06705.1
Hypothetical protein; Pfam:pfam08818 Domain of unknown function (DU1801).
 
     0.826
AKM06703.1
Hypothetical protein.
       0.773
AKM06700.1
Hypothetical protein; Pfam:pfam12969 Domain of Unknown Function with PDB structure (DUF3857).
       0.588
AKM07446.1
Putative transcriptional regulator, ArsR family; Pfam:pfam12840 Helix-turn-helix domain.
  
     0.493
AKM06706.1
Putative MscS family transporter; Pfam:pfam00924 Mechanosensitive ion channel.
       0.464
AKM06699.1
Pfam:pfam00206 Lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
       0.428
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.