STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimKPutative alpha-L-glutamate ligase; Pfam:pfam08443 RimK-like ATP-grasp domain; Belongs to the RimK family. (301 aa)    
Predicted Functional Partners:
AKM06733.1
Ribosomal protein S6 modification protein; Pfam:pfam05618 Putative ATP-dependant zinc protease.
   
 0.994
AKM06735.1
Tryptophan synthase subunit beta.
       0.773
AKM06732.1
Peptidyl-dipeptidase; Pfam:pfam01401 Angiotensin-converting enzyme.
       0.643
AKM06731.1
Hydrolase; Pfam:pfam12697 Alpha/beta hydrolase family.
     
 0.472
AKM06729.1
Pfam:pfam01323 DSBA-like thioredoxin domain.
       0.447
gshB
Pfam:pfam02955 Prokaryotic glutathione synthetase, ATP-grasp domain; Belongs to the prokaryotic GSH synthase family.
 
   
 0.438
AKM06887.1
Nitroreductase; Pfam:pfam00881 Nitroreductase family.
  
  
 0.410
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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