STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM2010_66Pfam:pfam00487 Fatty acid desaturase. (366 aa)    
Predicted Functional Partners:
AM2010_65
Hypothetical protein.
 
     0.810
AKM06690.1
Putative membrane protein.
 
     0.623
AKM08104.1
Hypothetical protein.
 
     0.611
AKM08368.1
Pfam:pfam09912 Uncharacterized protein conserved in bacteria (DUF2141).
 
     0.576
AKM07057.1
TadE family protein.
  
     0.568
AKM06456.1
Signal peptide protein.
  
     0.558
AKM07015.1
Hypothetical protein; Pfam:pfam00111 2Fe-2S iron-sulfur cluster binding domain.
  
  
 0.554
AKM06443.1
ABC transporter; Pfam:pfam03886 Protein of unknown function (DUF330).
  
     0.540
AKM06342.1
Hypothetical protein.
  
   
 0.536
AKM07063.1
Septum formation initiator.
  
     0.506
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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