STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM2010_68Pfam:pfam03739 Predicted permease YjgP/YjgQ family. (365 aa)    
Predicted Functional Partners:
AM2010_69
Pfam:pfam03739 Predicted permease YjgP/YjgQ family.
 
 0.999
AKM08075.1
ABC-type transport system ATPase component; Pfam:pfam00005 ABC transporter.
 
 
 0.995
lptD
LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
  
 0.704
AKM06443.1
ABC transporter; Pfam:pfam03886 Protein of unknown function (DUF330).
  
     0.666
AKM06440.1
ABC-type transport system permease component; Pfam:pfam02405 Permease.
 
  
 0.658
clpS
ATP-dependent Clp protease adapter protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
       0.633
AM2010_67
Hypothetical protein.
       0.578
AKM08107.1
Putative acyl carrier protein; Pfam:pfam00550 Phosphopantetheine attachment site.
 
     0.572
AM2010_71
Pfam:pfam09361 Phasin protein.
 
     0.560
AKM08224.1
Pfam:pfam12700 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.536
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.