STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM06772.1Pfam:pfam01522 Polysaccharide deacetylase. (332 aa)    
Predicted Functional Partners:
AKM06771.1
Amidohydrolase family protein; Pfam:pfam13594 Amidohydrolase.
     
 0.799
AKM06433.1
Putative bacteriophage N4 adsorption protein B; Pfam:pfam13641 Glycosyltransferase like family 2.
  
  
 0.777
AKM07125.1
Beta-lactamase; Pfam:pfam00144 Beta-lactamase.
  
   
 0.540
AKM06770.1
Citrate lyase; Pfam:pfam03328 HpcH/HpaI aldolase/citrate lyase family; Belongs to the HpcH/HpaI aldolase family.
       0.520
AKM06358.1
Pfam:pfam08570 Protein of unknown function (DUF1761).
  
     0.511
AKM06982.1
Pfam:pfam01231 Indoleamine 2,3-dioxygenase.
  
     0.457
AKM06889.1
Membrane protein, putative.
  
     0.440
AKM07190.1
Beta-carotene hydroxylase; Pfam:pfam00487 Fatty acid desaturase.
  
     0.424
AM2010_44
Hypothetical protein; Pfam:pfam00565 Staphylococcal nuclease homologue.
  
     0.404
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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