STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM06783.1Amidohydrolase family enzyme; Pfam:pfam13594 Amidohydrolase. (527 aa)    
Predicted Functional Partners:
AKM08140.1
Amidohydrolase; Pfam:pfam01546 Peptidase family M20/M25/M40.
 
   
 0.710
AKM06782.1
Pfam:pfam00005 ABC transporter.
       0.664
AKM06781.1
Hypothetical protein.
       0.618
AKM08488.1
Pfam:pfam05960 Bacterial protein of unknown function (DUF885).
  
     0.613
AKM06784.1
Pfam:pfam04402 Protein of unknown function (DUF541).
       0.565
AKM08005.1
Isopenicillin N epimerase; Pfam:pfam00266 Aminotransferase class-V.
  
   
 0.556
AKM06758.1
Pfam:pfam13594 Amidohydrolase.
 
     0.555
AKM08464.1
Pfam:pfam05960 Bacterial protein of unknown function (DUF885).
  
     0.547
AKM07860.1
Peptidase S10; Pfam:pfam00450 Serine carboxypeptidase.
  
     0.537
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.494
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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