STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM2010_71Pfam:pfam09361 Phasin protein. (275 aa)    
Predicted Functional Partners:
AM2010_72
Poly-3-hydroxybutyrate synthase; Pfam:pfam07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus.
 
  
 0.777
AKM06760.1
WalW protein.
  
     0.663
AKM07331.1
Hypothetical protein.
  
     0.645
AM2010_69
Pfam:pfam03739 Predicted permease YjgP/YjgQ family.
 
     0.639
clpS
ATP-dependent Clp protease adapter protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
       0.634
AKM08297.1
Hypothetical protein.
 
     0.607
AKM07585.1
Hypothetical protein.
  
     0.597
AKM06471.1
Pfam:pfam09476 Pilus biogenesis CpaD protein (pilus_cpaD).
  
     0.591
AM2010_68
Pfam:pfam03739 Predicted permease YjgP/YjgQ family.
 
     0.590
AKM08213.1
Pfam:pfam11233 Protein of unknown function (DUF3035).
  
     0.573
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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