STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM06801.1Pfam:pfam00196 Bacterial regulatory proteins, luxR family. (329 aa)    
Predicted Functional Partners:
AKM06319.1
CheA kinase; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 
 0.871
AKM07266.1
Pfam:pfam00072 Response regulator receiver domain.
  
 
 0.696
AKM07106.1
TPR repeat-containing protein.
  
 
 0.640
AM2010_63
Pfam:pfam00072 Response regulator receiver domain.
 
 
 0.587
AKM07529.1
Hypothetical protein; Pfam:pfam05226 CHASE2 domain.
  
 
 0.584
AKM07142.1
Diguanylate cyclase/phosphodiesterase; Pfam:pfam00563 EAL domain.
 
  
 0.576
AKM08545.1
Hypothetical protein; Pfam:pfam08447 PAS fold.
  
 
 0.556
AKM06800.1
Hypothetical protein.
     
 0.541
AKM07294.1
Two-component signal transduction histidine kinase; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
   
 
 0.536
AKM06836.1
Diguanylate cyclase; Pfam:pfam00563 EAL domain.
 
  
 0.528
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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