Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AKM06822.1 | rplM | AM2010_741 | AM2010_2369 | Pfam:pfam01197 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.991 |
| AKM06822.1 | rplT | AM2010_741 | AM2010_2093 | Pfam:pfam01197 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.991 |
| AKM06822.1 | rplU | AM2010_741 | AM2010_1365 | Pfam:pfam01197 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.992 |
| AKM06822.1 | rpmA | AM2010_741 | AM2010_1364 | Pfam:pfam01197 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Pfam:pfam01016 Ribosomal L27 protein; Belongs to the bacterial ribosomal protein bL27 family. | 0.991 |
| AKM06822.1 | rpmB | AM2010_741 | AM2010_2283 | Pfam:pfam01197 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Pfam:pfam00830 Ribosomal L28 family; Belongs to the bacterial ribosomal protein bL28 family. | 0.991 |
| AKM06822.1 | rpmF | AM2010_741 | AM2010_1480 | Pfam:pfam01197 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Pfam:pfam01783 Ribosomal L32p protein family; Belongs to the bacterial ribosomal protein bL32 family. | 0.991 |
| AKM06822.1 | rpmI | AM2010_741 | AM2010_2094 | Pfam:pfam01197 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Pfam:pfam01632 Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.991 |
| AKM06822.1 | rpsI | AM2010_741 | AM2010_2370 | Pfam:pfam01197 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Pfam:pfam00380 Ribosomal protein S9/S16; Belongs to the universal ribosomal protein uS9 family. | 0.991 |
| AKM06822.1 | rpsP | AM2010_741 | AM2010_640 | Pfam:pfam01197 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Pfam:pfam00886 Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.992 |
| AKM06822.1 | rpsT | AM2010_741 | AM2010_2701 | Pfam:pfam01197 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.992 |
| rplM | AKM06822.1 | AM2010_2369 | AM2010_741 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Pfam:pfam01197 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | 0.991 |
| rplM | rplT | AM2010_2369 | AM2010_2093 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.996 |
| rplM | rplU | AM2010_2369 | AM2010_1365 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.992 |
| rplM | rpmA | AM2010_2369 | AM2010_1364 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Pfam:pfam01016 Ribosomal L27 protein; Belongs to the bacterial ribosomal protein bL27 family. | 0.995 |
| rplM | rpmB | AM2010_2369 | AM2010_2283 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Pfam:pfam00830 Ribosomal L28 family; Belongs to the bacterial ribosomal protein bL28 family. | 0.992 |
| rplM | rpmF | AM2010_2369 | AM2010_1480 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Pfam:pfam01783 Ribosomal L32p protein family; Belongs to the bacterial ribosomal protein bL32 family. | 0.989 |
| rplM | rpmI | AM2010_2369 | AM2010_2094 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Pfam:pfam01632 Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.991 |
| rplM | rpsI | AM2010_2369 | AM2010_2370 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Pfam:pfam00380 Ribosomal protein S9/S16; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
| rplM | rpsP | AM2010_2369 | AM2010_640 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Pfam:pfam00886 Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.992 |
| rplM | rpsT | AM2010_2369 | AM2010_2701 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.991 |
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