STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM2010_76Hypothetical protein; Pfam:pfam13622 Thioesterase-like superfamily. (269 aa)    
Predicted Functional Partners:
AKM08373.1
Pfam:pfam03435 Saccharopine dehydrogenase.
 
     0.594
AKM06349.1
Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.
  
   
 0.560
AKM07844.1
Pfam:pfam00593 TonB dependent receptor.
  
     0.545
AKM06886.1
Hypothetical protein; Pfam:pfam05019 Coenzyme Q (ubiquinone) biosynthesis protein Coq4.
  
     0.527
AKM08679.1
Pfam:pfam13489 Methyltransferase domain.
  
     0.436
AKM08682.1
Pfam:pfam00593 TonB dependent receptor.
  
     0.420
AKM07508.1
Metal transporter; Pfam:pfam02321 Outer membrane efflux protein.
  
     0.411
AKM06860.1
Membrane protein; Pfam:pfam01124 MAPEG family.
  
     0.408
AKM06984.1
Pfam:pfam04314 Protein of unknown function (DUF461).
 
     0.408
AKM08657.1
FF domain-containing protein; Pfam:pfam10118 Predicted metal-dependent hydrolase.
  
     0.402
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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