STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM2010_79TonB-dependent receptor-like protein. (874 aa)    
Predicted Functional Partners:
AKM06212.1
Pfam:pfam00593 TonB dependent receptor.
 
  
 0.794
AKM07806.1
Hypothetical protein; Pfam:pfam13650 Aspartyl protease.
  
     0.736
AKM08381.1
Pfam:pfam12412 Protein of unknown function (DUF3667).
  
     0.734
AKM07876.1
Autotransporter beta-domain-containing protein; Pfam:pfam03797 Autotransporter beta-domain.
  
   
 0.713
AKM07681.1
TonB-dependent receptor; Pfam:pfam14905 Outer membrane protein beta-barrel family.
  
    0.695
AKM06559.1
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
 
   
 0.683
AKM08627.1
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
 
   
 0.635
AKM07736.1
Hypothetical protein.
    
 
 0.615
AKM08163.1
Energy transducer TonB; Pfam:pfam04652 Vta1 like.
 
 
 0.601
AM2010_77
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
  
    0.599
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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