STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM2010_82Vitamin B12 ABC transporter, B12-binding component BtuF; Pfam:pfam01497 Periplasmic binding protein. (291 aa)    
Predicted Functional Partners:
AM2010_81
ABC transporter permease; Pfam:pfam01032 FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.999
AM2010_80
Iron compound ABC transporter, ATP-binding protein; Pfam:pfam00005 ABC transporter.
 
 
 0.998
AKM06632.1
Pfam:pfam00593 TonB dependent receptor.
 
  
 0.749
AKM07314.1
Pfam:pfam00593 TonB dependent receptor.
 
  
 0.601
AKM07915.1
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
 
  
 0.599
AKM06463.1
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
 
  
 0.590
AKM07844.1
Pfam:pfam00593 TonB dependent receptor.
 
  
 0.581
AKM06364.1
Pfam:pfam00593 TonB dependent receptor.
 
  
 0.545
AM2010_77
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
 
  
 0.534
AKM07944.1
Membrane protein; Pfam:pfam00593 TonB dependent receptor.
 
  
 0.532
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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