Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AM2010_83Sigma 28 (Flagella/Sporulation); Pfam:pfam04545 Sigma-70, region 4; Belongs to the sigma-70 factor family. (239 aa)    
Predicted Functional Partners:
AM2010_87
Hypothetical protein; Pfam:pfam04316 Anti-sigma-28 factor, FlgM.
  
 0.998
AKM07977.1
RNA polymerase sigma factor; Pfam:pfam04545 Sigma-70, region 4; Belongs to the sigma-70 factor family.
  
  
  0.974
AM2010_84
Flagellar biosynthesis protein FlhA; Pfam:pfam00771 FHIPEP family.
 
  
 0.971
flgK
Flagellar hook-associated protein.
 
  
 0.952
AM2010_91
Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
 
 0.941
AKM06220.1
Flagellar motor switch protein; Pfam:pfam01706 FliG C-terminal domain.
 
  
 0.935
AM2010_95
Pfam:pfam06429 Flagellar basal body rod FlgEFG protein C-terminal.
 
  
 0.933
AKM06227.1
Flagellar motor switch protein; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
 
  
 0.921
AKM06193.1
Flagellar hook protein FlgL; Pfam:pfam00669 Bacterial flagellin N-terminal helical region.
 
  
 0.917
AM2010_88
Flagellar protein; Pfam:pfam13144 SAF-like.
  
  
 0.915
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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