STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM2010_85Lytic transglycosylase, catalytic. (288 aa)    
Predicted Functional Partners:
AM2010_83
Sigma 28 (Flagella/Sporulation); Pfam:pfam04545 Sigma-70, region 4; Belongs to the sigma-70 factor family.
     
 0.812
AM2010_84
Flagellar biosynthesis protein FlhA; Pfam:pfam00771 FHIPEP family.
       0.809
AKM06195.1
OmpA/MotB; Pfam:pfam13677 Membrane MotB of proton-channel complex MotA/MotB.
 
  
 0.661
AM2010_87
Hypothetical protein; Pfam:pfam04316 Anti-sigma-28 factor, FlgM.
     
 0.603
AM2010_86
Hypothetical protein.
       0.593
AKM08271.1
Clp protease ClpX; Pfam:pfam07724 AAA domain (Cdc48 subfamily); Belongs to the ClpA/ClpB family.
  
  
 0.531
clpB
ATP-dependent Clp protease; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.
  
  
 0.531
AKM07450.1
Pfam:pfam06170 Protein of unknown function (DUF983).
 
     0.515
AM2010_88
Flagellar protein; Pfam:pfam13144 SAF-like.
       0.498
AKM07909.1
Pfam:pfam06577 Protein of unknown function (DUF1134).
  
     0.494
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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