STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM2010_87Hypothetical protein; Pfam:pfam04316 Anti-sigma-28 factor, FlgM. (96 aa)    
Predicted Functional Partners:
AM2010_83
Sigma 28 (Flagella/Sporulation); Pfam:pfam04545 Sigma-70, region 4; Belongs to the sigma-70 factor family.
  
 0.997
AKM07977.1
RNA polymerase sigma factor; Pfam:pfam04545 Sigma-70, region 4; Belongs to the sigma-70 factor family.
  
 0.994
AKM06234.1
Flagellin.
  
 
 0.978
AM2010_88
Flagellar protein; Pfam:pfam13144 SAF-like.
  
  
 0.953
flgK
Flagellar hook-associated protein.
  
  
 0.924
AM2010_91
Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
  
  
 0.920
AKM06233.1
Flagellar hook protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
  
 0.905
AKM06319.1
CheA kinase; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 
 0.905
AKM06193.1
Flagellar hook protein FlgL; Pfam:pfam00669 Bacterial flagellin N-terminal helical region.
  
  
 0.899
AKM06225.1
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
  
 0.893
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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