STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM06971.1Pfam:pfam02021 Uncharacterized protein family UPF0102; Belongs to the UPF0102 family. (116 aa)    
Predicted Functional Partners:
rsmI
Ribosomal RNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.809
AKM07594.1
Pfam:pfam05443 ROS/MUCR transcriptional regulator protein.
  
     0.682
gshB
Pfam:pfam02955 Prokaryotic glutathione synthetase, ATP-grasp domain; Belongs to the prokaryotic GSH synthase family.
       0.671
AKM07813.1
Hypothetical protein; Pfam:pfam03981 Ubiquinol-cytochrome C chaperone.
  
     0.651
AKM06969.1
ABC transporter substrate-binding protein; Pfam:pfam13458 Periplasmic binding protein.
       0.639
AKM06973.1
Alkaline phosphatase; Pfam:pfam09335 SNARE associated Golgi protein.
       0.619
AKM08439.1
Pfam:pfam10691 Protein of unknown function (DUF2497).
  
     0.583
AKM08650.1
Hypothetical protein; Pfam:pfam02698 DUF218 domain.
  
     0.575
AKM07027.1
Rare lipoprotein A; Pfam:pfam05036 Sporulation related domain.
  
   0.512
parE
DNA topoisomerase 4 subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.
       0.495
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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