STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM07027.1Rare lipoprotein A; Pfam:pfam05036 Sporulation related domain. (328 aa)    
Predicted Functional Partners:
AKM07026.1
Lytic murein transglycosylase; Pfam:pfam13406 Transglycosylase SLT domain.
 
   
 0.845
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
     0.561
AKM07028.1
Pfam:pfam00768 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
  
  
 0.513
AKM06971.1
Pfam:pfam02021 Uncharacterized protein family UPF0102; Belongs to the UPF0102 family.
  
   0.512
AKM07030.1
Pfam:pfam13177 DNA polymerase III, delta subunit.
   
 
 0.481
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.480
metG
Methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
  
   0.469
AKM07025.1
Hypothetical protein; Pfam:pfam12706 Beta-lactamase superfamily domain.
   
   0.463
tolB
Protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.449
AKM07917.1
Hypothetical protein; Pfam:pfam13594 Amidohydrolase.
  
 
 0.442
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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