STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM07028.1Pfam:pfam00768 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. (327 aa)    
Predicted Functional Partners:
AKM07393.1
Putative penicillin binding protein 1A; Pfam:pfam00912 Transglycosylase.
     
 0.919
AKM08666.1
Membrane carboxypeptidase; Pfam:pfam00912 Transglycosylase.
  
 
 0.915
AKM06698.1
Membrane carboxypeptidase (Penicillin-binding protein); Pfam:pfam00912 Transglycosylase.
  
 
 0.915
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.809
AKM07030.1
Pfam:pfam13177 DNA polymerase III, delta subunit.
     
 0.674
metG
Methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
  
  
 0.670
AKM07032.1
Pfam:pfam01026 TatD related DNase.
  
    0.670
AKM07033.1
Beta-lactamase; Pfam:pfam12706 Beta-lactamase superfamily domain.
       0.656
AKM07026.1
Lytic murein transglycosylase; Pfam:pfam13406 Transglycosylase SLT domain.
 
   
 0.641
AKM07034.1
Hypothetical protein.
       0.625
Your Current Organism:
Altererythrobacter marensis
NCBI taxonomy Id: 543877
Other names: A. marensis, Altererythrobacter marensis Seo and Lee 2010, Altererythrobacter sp. MSW-14, DSM 21428, KCTC 22370, strain MSW-14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.