Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D521_1663Hypothetical protein. (103 aa)    
Predicted Functional Partners:
D521_1662
Putative copper resistance-related lipoprotein.
       0.799
D521_1661
Twin-arginine translocation pathway signal.
       0.785
D521_1660
Blue (Type 1) copper domain protein.
       0.749
D521_1658
Hypothetical protein.
       0.745
D521_1659
Hypothetical protein.
       0.716
D521_1657
Heavy metal transport/detoxification protein.
       0.711
D521_1664
Hypothetical protein.
       0.570
D521_1656
LemA family protein.
       0.506
D521_1654
Hypothetical protein.
       0.491
D521_1655
Hypothetical protein.
       0.491
Your Current Organism:
beta proteobacterium CB
NCBI taxonomy Id: 543913
Other names: b. proteobacterium CB
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