STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRT54061.1Protein of unknown function (DUF3135). (120 aa)    
Predicted Functional Partners:
KRT55615.1
Protein of unknown function (DUF2802).
  
     0.685
KRT55114.1
Von Willebrand factor type A domain.
  
     0.596
KRT55165.1
Type IV pili methyl-accepting chemotaxis transducer N-term.
  
     0.522
KRT54060.1
Transcriptional antiterminator Rof (Rho-off).
       0.488
KRT53837.1
Hypothetical protein.
  
     0.484
KRT55019.1
Type IV pili methyl-accepting chemotaxis transducer N-term.
  
     0.482
KRT53836.1
Protein of unknown function (DUF1329).
  
     0.481
KRT55618.1
Chemotaxis signal transduction protein.
  
     0.459
KRT55075.1
FecR family protein.
  
     0.450
KRT55018.1
Type IV pili methyl-accepting chemotaxis transducer N-term.
  
     0.430
Your Current Organism:
endosymbiont of Ridgeia
NCBI taxonomy Id: 54398
Other names: Ridgeia piscesae endosymbiont, e. of Ridgeia piscesae, endosymbiont of Ridgeia piscesae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.