Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KRT53628.1 | KRT53653.1 | Ga0074115_10663 | Ga0074115_10688 | Diguanylate cyclase/phosphodiesterase. | PAS domain S-box. | 0.999 |
KRT53628.1 | KRT54177.1 | Ga0074115_10663 | Ga0074115_10374 | Diguanylate cyclase/phosphodiesterase. | Hypothetical protein; Contains cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinase. | 0.837 |
KRT53628.1 | KRT54442.1 | Ga0074115_10663 | Ga0074115_10580 | Diguanylate cyclase/phosphodiesterase. | TPR repeat. | 0.971 |
KRT53628.1 | rpoD | Ga0074115_10663 | Ga0074115_10870 | Diguanylate cyclase/phosphodiesterase. | RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.480 |
KRT53628.1 | rpoZ | Ga0074115_10663 | Ga0074115_14014 | Diguanylate cyclase/phosphodiesterase. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.402 |
KRT53653.1 | KRT53628.1 | Ga0074115_10688 | Ga0074115_10663 | PAS domain S-box. | Diguanylate cyclase/phosphodiesterase. | 0.999 |
KRT53653.1 | KRT54177.1 | Ga0074115_10688 | Ga0074115_10374 | PAS domain S-box. | Hypothetical protein; Contains cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinase. | 0.797 |
KRT53653.1 | KRT54442.1 | Ga0074115_10688 | Ga0074115_10580 | PAS domain S-box. | TPR repeat. | 0.972 |
KRT53653.1 | KRT55650.1 | Ga0074115_10688 | Ga0074115_1225 | PAS domain S-box. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.446 |
KRT53653.1 | KRT56157.1 | Ga0074115_10688 | Ga0074115_1337 | PAS domain S-box. | Adenylate cyclase. | 0.546 |
KRT53653.1 | rpoB | Ga0074115_10688 | Ga0074115_1226 | PAS domain S-box. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.421 |
KRT53653.1 | rpoD | Ga0074115_10688 | Ga0074115_10870 | PAS domain S-box. | RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.580 |
KRT53653.1 | rpoZ | Ga0074115_10688 | Ga0074115_14014 | PAS domain S-box. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.410 |
KRT53782.1 | KRT54177.1 | Ga0074115_101117 | Ga0074115_10374 | 6-pyruvoyl tetrahydropterin synthase. | Hypothetical protein; Contains cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinase. | 0.856 |
KRT54177.1 | KRT53628.1 | Ga0074115_10374 | Ga0074115_10663 | Hypothetical protein; Contains cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinase. | Diguanylate cyclase/phosphodiesterase. | 0.837 |
KRT54177.1 | KRT53653.1 | Ga0074115_10374 | Ga0074115_10688 | Hypothetical protein; Contains cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinase. | PAS domain S-box. | 0.797 |
KRT54177.1 | KRT53782.1 | Ga0074115_10374 | Ga0074115_101117 | Hypothetical protein; Contains cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinase. | 6-pyruvoyl tetrahydropterin synthase. | 0.856 |
KRT54177.1 | KRT54442.1 | Ga0074115_10374 | Ga0074115_10580 | Hypothetical protein; Contains cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinase. | TPR repeat. | 0.926 |
KRT54177.1 | KRT55650.1 | Ga0074115_10374 | Ga0074115_1225 | Hypothetical protein; Contains cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.921 |
KRT54177.1 | KRT56157.1 | Ga0074115_10374 | Ga0074115_1337 | Hypothetical protein; Contains cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinase. | Adenylate cyclase. | 0.893 |
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