STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRT54541.1Hypothetical protein. (176 aa)    
Predicted Functional Partners:
KRT54542.1
Hypothetical protein.
 
     0.951
KRT54543.1
Concanavalin A-like lectin/glucanases superfamily.
 
     0.946
KRT54544.1
Hypothetical protein.
 
     0.946
KRT54540.1
Hypothetical protein.
 
     0.927
KRT54538.1
Outer membrane protein assembly factor BamD, BamD/ComL family.
 
     0.920
KRT54539.1
Periplasmic TolA-binding protein (function unknown).
 
     0.920
KRT54537.1
Hypothetical protein.
 
     0.904
KRT54536.1
Tetratricopeptide repeat.
 
     0.901
KRT54533.1
Biopolymer transport protein ExbD; Overlaps another CDS with the same product name.
 
     0.882
KRT54532.1
Biopolymer transport protein ExbD; Overlaps another CDS with the same product name.
 
     0.881
Your Current Organism:
endosymbiont of Ridgeia
NCBI taxonomy Id: 54398
Other names: Ridgeia piscesae endosymbiont, e. of Ridgeia piscesae, endosymbiont of Ridgeia piscesae
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