STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRT54547.1Outer membrane protein beta-barrel domain/Bacterial SH3 domain. (249 aa)    
Predicted Functional Partners:
KRT54548.1
Outer membrane protein beta-barrel domain.
 
     0.952
KRT54545.1
Hypothetical protein.
 
     0.946
KRT54546.1
Hypothetical protein.
 
     0.946
KRT54551.1
Protein of unknown function (DUF3570).
 
     0.944
KRT54550.1
Protein of unknown function (DUF4266).
 
     0.943
KRT54549.1
Peroxiredoxin.
 
     0.873
KRT54541.1
Hypothetical protein.
 
     0.776
KRT54544.1
Hypothetical protein.
 
     0.776
KRT54542.1
Hypothetical protein.
 
     0.775
KRT54543.1
Concanavalin A-like lectin/glucanases superfamily.
  
     0.774
Your Current Organism:
endosymbiont of Ridgeia
NCBI taxonomy Id: 54398
Other names: Ridgeia piscesae endosymbiont, e. of Ridgeia piscesae, endosymbiont of Ridgeia piscesae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.