STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRT54884.1Polysaccharide deacetylase. (299 aa)    
Predicted Functional Partners:
KRT55834.1
Glycosyl transferase family 2.
  
 
 0.910
KRT54976.1
4-amino-4-deoxy-L-arabinose transferase or related glycosyltransferase of PMT family.
  
  
 0.884
KRT54979.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 
 0.786
KRT54883.1
Collagenase-like protease, PrtC family.
       0.773
KRT55103.1
Glycosyl hydrolases family 16/Cellulose binding domain.
    
 0.677
KRT54882.1
Putative iron-regulated protein.
       0.576
nagZ
Periplasmic beta-glucosidase or glycosidase-like protein; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
     
 0.535
KRT54796.1
Dihydroorotase.
    
  0.508
KRT54980.1
4-amino-4-deoxy-L-arabinose transferase or related glycosyltransferase of PMT family.
  
  
 0.483
KRT56139.1
Carbohydrate binding domain/Cellulase (glycosyl hydrolase family 5); Belongs to the glycosyl hydrolase 5 (cellulase A) family.
     
 0.480
Your Current Organism:
endosymbiont of Ridgeia
NCBI taxonomy Id: 54398
Other names: Ridgeia piscesae endosymbiont, e. of Ridgeia piscesae, endosymbiont of Ridgeia piscesae
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.