STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRT54995.1Putative integral membrane protein DUF46. (163 aa)    
Predicted Functional Partners:
KRT54994.1
Putative phosphohydrolase, MPP superfamily.
 
     0.891
rnhB
RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
   
    0.800
ubiA
4-hydroxybenzoate polyprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
    
 0.694
KRT55880.1
Phosphatidylglycerophosphate synthase.
 
 
 0.692
KRT55556.1
Type II secretion system (T2SS), protein M subtype b.
  
     0.684
KRT55538.1
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
   
 0.633
KRT55557.1
Tfp pilus assembly protein PilN.
  
     0.583
KRT55560.1
Prepilin-type N-terminal cleavage/methylation domain; Overlaps another CDS with the same product name.
  
     0.533
KRT54018.1
1-acyl-sn-glycerol-3-phosphate acyltransferase.
     
 0.524
KRT55101.1
1-acyl-sn-glycerol-3-phosphate acyltransferase.
     
 0.524
Your Current Organism:
endosymbiont of Ridgeia
NCBI taxonomy Id: 54398
Other names: Ridgeia piscesae endosymbiont, e. of Ridgeia piscesae, endosymbiont of Ridgeia piscesae
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