STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRT55103.1Glycosyl hydrolases family 16/Cellulose binding domain. (440 aa)    
Predicted Functional Partners:
KRT55053.1
Hypothetical protein; Contain YyaL, SSP411 family; contains thoiredoxin and six-hairpin glycosidase-like domains.
  
 0.946
KRT55834.1
Glycosyl transferase family 2.
  
 
 0.848
KRT54543.1
Concanavalin A-like lectin/glucanases superfamily.
 
 0.808
nagZ
Periplasmic beta-glucosidase or glycosidase-like protein; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
    
 0.805
KRT56121.1
9/PKD domain/Glycoside-hydrolase family GH114/N-terminal ig-like domain of cellulase.
  
  
 0.733
KRT56139.1
Carbohydrate binding domain/Cellulase (glycosyl hydrolase family 5); Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
 
 0.704
KRT55853.1
Hypothetical protein.
  
 
 0.684
KRT54694.1
Polysaccharide deacetylase.
    
 0.677
KRT54884.1
Polysaccharide deacetylase.
    
 0.677
KRT56670.1
FG-GAP repeat.
 
 
 0.676
Your Current Organism:
endosymbiont of Ridgeia
NCBI taxonomy Id: 54398
Other names: Ridgeia piscesae endosymbiont, e. of Ridgeia piscesae, endosymbiont of Ridgeia piscesae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.