STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRT55473.1DNA-binding transcriptional response regulator, NtrC family; Contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains. (448 aa)    
Predicted Functional Partners:
KRT55474.1
PAS/PAC sensor signal transduction histidine kinase.
 0.951
KRT55895.1
PAS domain S-box.
  
 0.898
KRT55178.1
ABC-type amino acid transport/signal transduction system, periplasmic component/domain.
  
 0.888
KRT53653.1
PAS domain S-box.
  
 0.828
KRT53599.1
PAS domain S-box/diguanylate cyclase (GGDEF) domain.
  
 0.826
KRT53729.1
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.824
KRT55571.1
PAS domain S-box.
  
 0.822
KRT53628.1
Diguanylate cyclase/phosphodiesterase.
  
 0.802
KRT53593.1
Signal transduction histidine kinase.
  
0.792
KRT55969.1
PAS domain S-box.
  
0.776
Your Current Organism:
endosymbiont of Ridgeia
NCBI taxonomy Id: 54398
Other names: Ridgeia piscesae endosymbiont, e. of Ridgeia piscesae, endosymbiont of Ridgeia piscesae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.