STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRT56231.1Hypothetical protein; Contain YbcC, UPF0753/DUF2309 family; Belongs to the UPF0753 family. (1095 aa)    
Predicted Functional Partners:
KRT56232.1
NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus.
 
 0.964
KRT56233.1
NADH dehydrogenase subunit M.
 
     0.897
KRT56230.1
NADH dehydrogenase subunit M.
 
     0.814
KRT56234.1
NADH dehydrogenase subunit M.
 
     0.704
KRT54411.1
NADH dehydrogenase subunit L.
  
 
 0.633
KRT56235.1
Putative Zn-dependent metalloprotease, SprT family; Belongs to the SprT family.
       0.559
KRT55568.1
50S ribosome-binding GTPase; Overlaps another CDS with the same product name.
  
     0.467
KRT54444.1
Protein of unknown function (DUF1501).
  
     0.434
KRT55569.1
50S ribosome-binding GTPase; Overlaps another CDS with the same product name.
  
     0.418
Your Current Organism:
endosymbiont of Ridgeia
NCBI taxonomy Id: 54398
Other names: Ridgeia piscesae endosymbiont, e. of Ridgeia piscesae, endosymbiont of Ridgeia piscesae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.