STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRT56387.1Binding-protein-dependent transport system inner membrane component. (115 aa)    
Predicted Functional Partners:
KRT56386.1
Hypothetical protein.
     0.994
KRT56385.1
NMT1-like family.
 
 
 0.989
KRT56388.1
ABC transporter.
 
 
 0.986
KRT56389.1
ABC transporter.
 
 
 0.983
KRT55225.1
Assimilatory nitrite reductase (NAD(P)H) large subunit precursor; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
  
 0.642
KRT55223.1
Nitrate reductase (quinol-dependent), catalytic subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.619
KRT55460.1
Rubredoxin.
  
 
  0.598
KRT54763.1
Taurine catabolism dioxygenase TauD, TfdA family.
  
 
 0.553
KRT56150.1
Hypothetical protein.
  
 
 0.553
KRT56669.1
Taurine catabolism dioxygenase TauD, TfdA family.
  
 
 0.553
Your Current Organism:
endosymbiont of Ridgeia
NCBI taxonomy Id: 54398
Other names: Ridgeia piscesae endosymbiont, e. of Ridgeia piscesae, endosymbiont of Ridgeia piscesae
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