KRT56625.1 protein (endosymbiont of Ridgeia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRT56625.1

Copper chaperone CopZ. (102 aa)

Predicted Functional Partners:

KRT54368.1

0.894

KRT56628.1

0.892

KRT55171.1

0.850

KRT55170.1

0.845

KRT56551.1

0.845

KRT56624.1

0.774

KRT56623.1

0.773

KRT56626.1

0.735

rplN

0.729

KRT56627.1

0.673

Your Current Organism:

endosymbiont of Ridgeia

NCBI taxonomy Id: 54398
Other names: Ridgeia piscesae endosymbiont, e. of Ridgeia piscesae, endosymbiont of Ridgeia piscesae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRT54368.1	KRT55171.1	Ga0074115_1054	Ga0074115_11468	Copper-(or silver)-translocating P-type ATPase.	ATPase, P-type (transporting), HAD superfamily, subfamily IC.	0.916
KRT54368.1	KRT56625.1	Ga0074115_1054	Ga0074115_1663	Copper-(or silver)-translocating P-type ATPase.	Copper chaperone CopZ.	0.894
KRT55170.1	KRT55171.1	Ga0074115_11467	Ga0074115_11468	Cu+-exporting ATPase; P-type (transporting), HAD superfamily, subfamily IC/heavy metal translocating P-type ATPase.	ATPase, P-type (transporting), HAD superfamily, subfamily IC.	0.998
KRT55170.1	KRT56625.1	Ga0074115_11467	Ga0074115_1663	Cu+-exporting ATPase; P-type (transporting), HAD superfamily, subfamily IC/heavy metal translocating P-type ATPase.	Copper chaperone CopZ.	0.845
KRT55171.1	KRT54368.1	Ga0074115_11468	Ga0074115_1054	ATPase, P-type (transporting), HAD superfamily, subfamily IC.	Copper-(or silver)-translocating P-type ATPase.	0.916
KRT55171.1	KRT55170.1	Ga0074115_11468	Ga0074115_11467	ATPase, P-type (transporting), HAD superfamily, subfamily IC.	Cu+-exporting ATPase; P-type (transporting), HAD superfamily, subfamily IC/heavy metal translocating P-type ATPase.	0.998
KRT55171.1	KRT56551.1	Ga0074115_11468	Ga0074115_1547	ATPase, P-type (transporting), HAD superfamily, subfamily IC.	Copper-(or silver)-translocating P-type ATPase.	0.853
KRT55171.1	KRT56625.1	Ga0074115_11468	Ga0074115_1663	ATPase, P-type (transporting), HAD superfamily, subfamily IC.	Copper chaperone CopZ.	0.850
KRT55171.1	KRT56627.1	Ga0074115_11468	Ga0074115_1665	ATPase, P-type (transporting), HAD superfamily, subfamily IC.	MerT mercuric transport protein.	0.407
KRT55171.1	KRT56628.1	Ga0074115_11468	Ga0074115_1666	ATPase, P-type (transporting), HAD superfamily, subfamily IC.	Heavy-metal-associated domain.	0.828
KRT55171.1	rplN	Ga0074115_11468	Ga0074115_14916	ATPase, P-type (transporting), HAD superfamily, subfamily IC.	LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.601
KRT56551.1	KRT55171.1	Ga0074115_1547	Ga0074115_11468	Copper-(or silver)-translocating P-type ATPase.	ATPase, P-type (transporting), HAD superfamily, subfamily IC.	0.853
KRT56551.1	KRT56625.1	Ga0074115_1547	Ga0074115_1663	Copper-(or silver)-translocating P-type ATPase.	Copper chaperone CopZ.	0.845
KRT56623.1	KRT56624.1	Ga0074115_1661	Ga0074115_1662	Hypothetical protein.	Hypothetical protein.	0.773
KRT56623.1	KRT56625.1	Ga0074115_1661	Ga0074115_1663	Hypothetical protein.	Copper chaperone CopZ.	0.773
KRT56623.1	KRT56626.1	Ga0074115_1661	Ga0074115_1664	Hypothetical protein.	Hypothetical protein.	0.671
KRT56623.1	KRT56627.1	Ga0074115_1661	Ga0074115_1665	Hypothetical protein.	MerT mercuric transport protein.	0.448
KRT56623.1	KRT56628.1	Ga0074115_1661	Ga0074115_1666	Hypothetical protein.	Heavy-metal-associated domain.	0.400
KRT56624.1	KRT56623.1	Ga0074115_1662	Ga0074115_1661	Hypothetical protein.	Hypothetical protein.	0.773
KRT56624.1	KRT56625.1	Ga0074115_1662	Ga0074115_1663	Hypothetical protein.	Copper chaperone CopZ.	0.774