STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OKZ20178.1Lysine 2,3-aminomutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (414 aa)    
Predicted Functional Partners:
OKZ20179.1
D-lysine 5,6-aminomutase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.928
OKZ20180.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.833
OKZ20223.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.587
BHV81_13670
Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.581
bioB
Biotin synthase BioB; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
    
 0.542
OKZ20177.1
L-erythro-3,5-diaminohexanoate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.505
OKZ21214.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.491
OKZ20647.1
Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.477
OKZ18427.1
Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.477
OKZ18513.1
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.
    
 0.462
Your Current Organism:
Butyricimonas synergistica
NCBI taxonomy Id: 544644
Other names: B. synergistica, Butyricimonas synergistica Sakamoto et al. 2009 emend. Hahnke et al. 2016, Butyricimonas synergistica Sakamoto et al. 2009 emend. Sakamoto et al. 2014, CCUG 56610, DSM 23225, JCM 15148, Porphyromonadaceae bacterium JCM 15148, strain MT01
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