STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OKZ18475.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (344 aa)    
Predicted Functional Partners:
OKZ18471.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.692
OKZ18474.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.649
OKZ18472.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.623
OKZ18473.1
Protoporphyrin IX magnesium chelatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.623
OKZ18470.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.589
OKZ21314.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.444
OKZ18476.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.437
OKZ20214.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.420
secD
Protein translocase subunit SecDF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
   
  0.406
Your Current Organism:
Butyricimonas synergistica
NCBI taxonomy Id: 544644
Other names: B. synergistica, Butyricimonas synergistica Sakamoto et al. 2009 emend. Hahnke et al. 2016, Butyricimonas synergistica Sakamoto et al. 2009 emend. Sakamoto et al. 2014, CCUG 56610, DSM 23225, JCM 15148, Porphyromonadaceae bacterium JCM 15148, strain MT01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.