STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OKZ15165.1Prevent-host-death protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (845 aa)    
Predicted Functional Partners:
OKZ15150.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.738
OKZ20619.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.661
OKZ17957.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.641
OKZ15147.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.637
OKZ15018.1
Zinc-dependent metalloproteinase lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.617
ruvB
Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
 
      0.615
OKZ15148.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.610
OKZ15149.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.610
OKZ20552.1
Membrane-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.576
OKZ20361.1
Membrane assembly protein AsmA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.560
Your Current Organism:
Butyricimonas synergistica
NCBI taxonomy Id: 544644
Other names: B. synergistica, Butyricimonas synergistica Sakamoto et al. 2009 emend. Hahnke et al. 2016, Butyricimonas synergistica Sakamoto et al. 2009 emend. Sakamoto et al. 2014, CCUG 56610, DSM 23225, JCM 15148, Porphyromonadaceae bacterium JCM 15148, strain MT01
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