STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCEG_00054PKHD-type hydroxylase TPA1. (689 aa)    
Predicted Functional Partners:
HCEG_05935
Elongation factor.
  
 
 0.994
HCEG_09066
Elongation factor 3.
  
 
 0.918
HCEG_02142
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
   0.837
HCEG_02381
Uncharacterized protein.
    
  0.713
HCEG_07349
Coproporphyrinogen III oxidase.
   
  
 0.637
HCEG_00984
HLH transcription factor.
   
 
 0.627
HCEG_04692
N2,N2-dimethylguanosine tRNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.
   
 
 0.617
HCEG_05715
Ribosome biogenesis protein TSR1.
   
    0.612
HCEG_04422
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
    0.584
HCEG_08043
Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
    
 
 0.582
Your Current Organism:
Histoplasma capsulatum H88
NCBI taxonomy Id: 544711
Other names: Ajellomyces capsulatus H88, H. capsulatum H88
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