HCEG_01206 protein (Histoplasma capsulatum H88)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

HCEG_01206

RNA polymerase II transcription factor SIII subunit A. (383 aa)

Predicted Functional Partners:

HCEG_09243

0.998

HCEG_08218

0.914

HCEG_05177

0.906

HCEG_07209

0.905

HCEG_08018

0.905

HCEG_00349

0.904

HCEG_02183

0.904

HCEG_05528

0.904

HCEG_05635

0.904

HCEG_05873

0.904

Your Current Organism:

Histoplasma capsulatum H88

NCBI taxonomy Id: 544711
Other names: Ajellomyces capsulatus H88, H. capsulatum H88

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCEG_00349	HCEG_01206	F0U8Y5	F0U950	60S ribosomal protein; Belongs to the universal ribosomal protein uL13 family.	RNA polymerase II transcription factor SIII subunit A.	0.904
HCEG_00349	HCEG_02183	F0U8Y5	F0UB05	60S ribosomal protein; Belongs to the universal ribosomal protein uL13 family.	60S ribosomal protein.	0.999
HCEG_00349	HCEG_05177	F0U8Y5	F0UKK8	60S ribosomal protein; Belongs to the universal ribosomal protein uL13 family.	60S ribosomal protein; Belongs to the universal ribosomal protein uL14 family.	0.999
HCEG_00349	HCEG_05528	F0U8Y5	F0UI08	60S ribosomal protein; Belongs to the universal ribosomal protein uL13 family.	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999
HCEG_00349	HCEG_05635	F0U8Y5	F0UIM1	60S ribosomal protein; Belongs to the universal ribosomal protein uL13 family.	Ribosomal protein L30.	0.999
HCEG_00349	HCEG_05873	F0U8Y5	F0UJX0	60S ribosomal protein; Belongs to the universal ribosomal protein uL13 family.	Large subunit ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.999
HCEG_00349	HCEG_07209	F0U8Y5	F0ULP6	60S ribosomal protein; Belongs to the universal ribosomal protein uL13 family.	50S ribosomal subunit.	0.996
HCEG_00349	HCEG_08218	F0U8Y5	F0USX6	60S ribosomal protein; Belongs to the universal ribosomal protein uL13 family.	60S ribosomal protein.	0.999
HCEG_01206	HCEG_00349	F0U950	F0U8Y5	RNA polymerase II transcription factor SIII subunit A.	60S ribosomal protein; Belongs to the universal ribosomal protein uL13 family.	0.904
HCEG_01206	HCEG_02183	F0U950	F0UB05	RNA polymerase II transcription factor SIII subunit A.	60S ribosomal protein.	0.904
HCEG_01206	HCEG_05177	F0U950	F0UKK8	RNA polymerase II transcription factor SIII subunit A.	60S ribosomal protein; Belongs to the universal ribosomal protein uL14 family.	0.906
HCEG_01206	HCEG_05528	F0U950	F0UI08	RNA polymerase II transcription factor SIII subunit A.	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family.	0.904
HCEG_01206	HCEG_05635	F0U950	F0UIM1	RNA polymerase II transcription factor SIII subunit A.	Ribosomal protein L30.	0.904
HCEG_01206	HCEG_05873	F0U950	F0UJX0	RNA polymerase II transcription factor SIII subunit A.	Large subunit ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.904
HCEG_01206	HCEG_07209	F0U950	F0ULP6	RNA polymerase II transcription factor SIII subunit A.	50S ribosomal subunit.	0.905
HCEG_01206	HCEG_08018	F0U950	F0USC6	RNA polymerase II transcription factor SIII subunit A.	Uncharacterized protein.	0.905
HCEG_01206	HCEG_08218	F0U950	F0USX6	RNA polymerase II transcription factor SIII subunit A.	60S ribosomal protein.	0.914
HCEG_01206	HCEG_09243	F0U950	F0UVV1	RNA polymerase II transcription factor SIII subunit A.	Transcriptional elongation regulator Elc1/Elongin C; Belongs to the SKP1 family.	0.998
HCEG_02183	HCEG_00349	F0UB05	F0U8Y5	60S ribosomal protein.	60S ribosomal protein; Belongs to the universal ribosomal protein uL13 family.	0.999
HCEG_02183	HCEG_01206	F0UB05	F0U950	60S ribosomal protein.	RNA polymerase II transcription factor SIII subunit A.	0.904