HCDG_02081 protein (Histoplasma capsulatum H143)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

HCDG_02081

Rhomboid family protein. (372 aa)

Predicted Functional Partners:

HCDG_08718

0.650

HCDG_04017

0.610

HCDG_03494

0.586

HCDG_04178

0.565

HCDG_04179

0.562

HCDG_00874

0.560

HCDG_00875

0.560

HCDG_00757

0.559

HCDG_08896

0.559

Your Current Organism:

Histoplasma capsulatum H143

NCBI taxonomy Id: 544712
Other names: Ajellomyces capsulatus H143, H. capsulatum H143

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCDG_00757	HCDG_02081	C6H225	C6H6N0	RRN9 domain-containing protein.	Rhomboid family protein.	0.559
HCDG_00874	HCDG_00875	C6H2E2	C6H2E3	Uncharacterized protein.	Uncharacterized protein.	0.730
HCDG_00874	HCDG_02081	C6H2E2	C6H6N0	Uncharacterized protein.	Rhomboid family protein.	0.560
HCDG_00875	HCDG_00874	C6H2E3	C6H2E2	Uncharacterized protein.	Uncharacterized protein.	0.730
HCDG_00875	HCDG_02081	C6H2E3	C6H6N0	Uncharacterized protein.	Rhomboid family protein.	0.560
HCDG_02081	HCDG_00757	C6H6N0	C6H225	Rhomboid family protein.	RRN9 domain-containing protein.	0.559
HCDG_02081	HCDG_00874	C6H6N0	C6H2E2	Rhomboid family protein.	Uncharacterized protein.	0.560
HCDG_02081	HCDG_00875	C6H6N0	C6H2E3	Rhomboid family protein.	Uncharacterized protein.	0.560
HCDG_02081	HCDG_03494	C6H6N0	C6HBU5	Rhomboid family protein.	Syntaxin 5.	0.586
HCDG_02081	HCDG_04017	C6H6N0	C6HCT6	Rhomboid family protein.	Uncharacterized protein.	0.610
HCDG_02081	HCDG_04178	C6H6N0	C6HD97	Rhomboid family protein.	F-actin-capping protein subunit alpha; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.565
HCDG_02081	HCDG_04179	C6H6N0	C6HD98	Rhomboid family protein.	Uncharacterized protein.	0.562
HCDG_02081	HCDG_08718	C6H6N0	C6HQP6	Rhomboid family protein.	t-SNARE coiled-coil homology domain-containing protein.	0.650
HCDG_02081	HCDG_08896	C6H6N0	C6HQH8	Rhomboid family protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.559
HCDG_03494	HCDG_02081	C6HBU5	C6H6N0	Syntaxin 5.	Rhomboid family protein.	0.586
HCDG_03494	HCDG_04017	C6HBU5	C6HCT6	Syntaxin 5.	Uncharacterized protein.	0.980
HCDG_03494	HCDG_08718	C6HBU5	C6HQP6	Syntaxin 5.	t-SNARE coiled-coil homology domain-containing protein.	0.999
HCDG_04017	HCDG_02081	C6HCT6	C6H6N0	Uncharacterized protein.	Rhomboid family protein.	0.610
HCDG_04017	HCDG_03494	C6HCT6	C6HBU5	Uncharacterized protein.	Syntaxin 5.	0.980
HCDG_04017	HCDG_08718	C6HCT6	C6HQP6	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.675