Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HCDG_01226 | HCDG_03613 | C6H3H3 | C6HC64 | Nitrate reductase. | pH-response transcription factor pacC/RIM101. | 0.677 |
HCDG_01226 | HCDG_05280 | C6H3H3 | C6HFU0 | Nitrate reductase. | Nitrate reductase. | 0.981 |
HCDG_01226 | HCDG_05281 | C6H3H3 | C6HFU1 | Nitrate reductase. | Nitrate reductase. | 0.981 |
HCDG_01530 | HCDG_02459 | C6H7W9 | C6H8C8 | BRO1 domain-containing protein. | pH response protein PalF. | 0.563 |
HCDG_01530 | HCDG_03185 | C6H7W9 | C6HAF4 | BRO1 domain-containing protein. | Cysteine protease PalB; Belongs to the peptidase C2 family. | 0.587 |
HCDG_01530 | HCDG_03613 | C6H7W9 | C6HC64 | BRO1 domain-containing protein. | pH-response transcription factor pacC/RIM101. | 0.703 |
HCDG_02227 | HCDG_02357 | C6H726 | C6H7F6 | Mitochondrial 40S ribosomal protein MRP2. | Mitochondrial ribosomal protein subunit S2. | 0.999 |
HCDG_02227 | HCDG_02735 | C6H726 | C6H954 | Mitochondrial 40S ribosomal protein MRP2. | 37S ribosomal protein Mrp17. | 0.999 |
HCDG_02227 | HCDG_03613 | C6H726 | C6HC64 | Mitochondrial 40S ribosomal protein MRP2. | pH-response transcription factor pacC/RIM101. | 0.651 |
HCDG_02227 | HCDG_05632 | C6H726 | C6HHF1 | Mitochondrial 40S ribosomal protein MRP2. | 40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
HCDG_02357 | HCDG_02227 | C6H7F6 | C6H726 | Mitochondrial ribosomal protein subunit S2. | Mitochondrial 40S ribosomal protein MRP2. | 0.999 |
HCDG_02357 | HCDG_02735 | C6H7F6 | C6H954 | Mitochondrial ribosomal protein subunit S2. | 37S ribosomal protein Mrp17. | 0.999 |
HCDG_02357 | HCDG_03613 | C6H7F6 | C6HC64 | Mitochondrial ribosomal protein subunit S2. | pH-response transcription factor pacC/RIM101. | 0.653 |
HCDG_02357 | HCDG_05632 | C6H7F6 | C6HHF1 | Mitochondrial ribosomal protein subunit S2. | 40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. | 0.996 |
HCDG_02459 | HCDG_01530 | C6H8C8 | C6H7W9 | pH response protein PalF. | BRO1 domain-containing protein. | 0.563 |
HCDG_02459 | HCDG_03185 | C6H8C8 | C6HAF4 | pH response protein PalF. | Cysteine protease PalB; Belongs to the peptidase C2 family. | 0.562 |
HCDG_02459 | HCDG_03613 | C6H8C8 | C6HC64 | pH response protein PalF. | pH-response transcription factor pacC/RIM101. | 0.656 |
HCDG_02735 | HCDG_02227 | C6H954 | C6H726 | 37S ribosomal protein Mrp17. | Mitochondrial 40S ribosomal protein MRP2. | 0.999 |
HCDG_02735 | HCDG_02357 | C6H954 | C6H7F6 | 37S ribosomal protein Mrp17. | Mitochondrial ribosomal protein subunit S2. | 0.999 |
HCDG_02735 | HCDG_03613 | C6H954 | C6HC64 | 37S ribosomal protein Mrp17. | pH-response transcription factor pacC/RIM101. | 0.651 |
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