STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCDG_06063U1 zinc finger domain-containing protein. (294 aa)    
Predicted Functional Partners:
HCDG_02376
U4/U6 small nuclear ribonucleoprotein Prp31.
    
 0.966
HCDG_09179
LSM domain-containing protein.
    
  0.942
HCDG_00934
U4/U6.U5 tri-snRNP-associated protein snu66.
    
 0.941
HCDG_03837
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.941
HCDG_03329
Pre-mRNA splicing factor.
    
 0.920
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
  0.902
HCDG_04012
C2H2 finger domain-containing protein.
   
 0.899
HCDG_06758
Microfibril-associated protein.
   
 0.897
HCDG_06974
Oligopeptidase.
    
 
 0.897
HCDG_06975
Pre-mRNA-splicing factor brr2.
    
 
 0.897
Your Current Organism:
Histoplasma capsulatum H143
NCBI taxonomy Id: 544712
Other names: Ajellomyces capsulatus H143, H. capsulatum H143
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.