STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCDG_07208ATP-dependent RNA helicase DBP7; Belongs to the DEAD box helicase family. (786 aa)    
Predicted Functional Partners:
HCDG_01346
U3 snoRNP-associated protein Rrp5.
   
 0.957
HCDG_07692
Nucleolar Complex 2 protein.
   
 
 0.954
HCDG_07689
ATP-dependent RNA helicase ROK1.
  
0.947
NOP7
Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
  0.940
HCDG_02009
RNA helicase.
   
 0.940
SPB1
AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.
   
 0.938
HCDG_05359
Nucleolar complex protein.
   
 0.935
HCDG_06321
U3 snoRNA associated protein.
   
  0.933
HCDG_02029
U3 small nucleolar RNA-associated protein.
   
  0.925
HCDG_05837
Sas10/Utp3 family protein.
   
  0.920
Your Current Organism:
Histoplasma capsulatum H143
NCBI taxonomy Id: 544712
Other names: Ajellomyces capsulatus H143, H. capsulatum H143
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.