Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HCDG_01495 | HCDG_02683 | C6H7T4 | C6H902 | RSC complex subunit Sfh1. | Bromodomain-containing protein. | 0.955 |
HCDG_01495 | HCDG_03575 | C6H7T4 | C6HC26 | RSC complex subunit Sfh1. | SWI-SNF complex subunit. | 0.998 |
HCDG_01495 | HCDG_03720 | C6H7T4 | C6HCH0 | RSC complex subunit Sfh1. | Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. | 0.999 |
HCDG_01495 | HCDG_04964 | C6H7T4 | C6HEU7 | RSC complex subunit Sfh1. | Uncharacterized protein. | 0.984 |
HCDG_01495 | HCDG_05029 | C6H7T4 | C6HGD8 | RSC complex subunit Sfh1. | WW domain-containing protein. | 0.955 |
HCDG_01495 | HCDG_05330 | C6H7T4 | C6HFZ0 | RSC complex subunit Sfh1. | Uncharacterized protein. | 0.955 |
HCDG_01495 | HCDG_06521 | C6H7T4 | C6HJZ0 | RSC complex subunit Sfh1. | RSC complex subunit. | 0.998 |
HCDG_01495 | HCDG_07930 | C6H7T4 | C6HNZ9 | RSC complex subunit Sfh1. | Endoglucanase. | 0.830 |
HCDG_01495 | HCDG_09057 | C6H7T4 | C6HS76 | RSC complex subunit Sfh1. | SWIB/MDM2 domain-containing protein. | 0.985 |
HCDG_02683 | HCDG_01495 | C6H902 | C6H7T4 | Bromodomain-containing protein. | RSC complex subunit Sfh1. | 0.955 |
HCDG_02683 | HCDG_03546 | C6H902 | C6HBZ7 | Bromodomain-containing protein. | Transcription factor Snf5p. | 0.977 |
HCDG_02683 | HCDG_03575 | C6H902 | C6HC26 | Bromodomain-containing protein. | SWI-SNF complex subunit. | 0.973 |
HCDG_02683 | HCDG_03720 | C6H902 | C6HCH0 | Bromodomain-containing protein. | Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. | 0.925 |
HCDG_02683 | HCDG_04964 | C6H902 | C6HEU7 | Bromodomain-containing protein. | Uncharacterized protein. | 0.613 |
HCDG_02683 | HCDG_06521 | C6H902 | C6HJZ0 | Bromodomain-containing protein. | RSC complex subunit. | 0.980 |
HCDG_02683 | HCDG_07930 | C6H902 | C6HNZ9 | Bromodomain-containing protein. | Endoglucanase. | 0.723 |
HCDG_02683 | HCDG_09057 | C6H902 | C6HS76 | Bromodomain-containing protein. | SWIB/MDM2 domain-containing protein. | 0.873 |
HCDG_03546 | HCDG_02683 | C6HBZ7 | C6H902 | Transcription factor Snf5p. | Bromodomain-containing protein. | 0.977 |
HCDG_03546 | HCDG_03575 | C6HBZ7 | C6HC26 | Transcription factor Snf5p. | SWI-SNF complex subunit. | 0.993 |
HCDG_03546 | HCDG_03720 | C6HBZ7 | C6HCH0 | Transcription factor Snf5p. | Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. | 0.966 |
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