STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhbUPutative protease YhbU precursor. (429 aa)    
Predicted Functional Partners:
OCL92203.1
Hypothetical protein.
     
 0.823
glyQ
Glycine--tRNA ligase alpha subunit.
  
    0.739
waaA
3-deoxy-D-manno-octulosonic acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
  
    0.709
rluD_2
Ribosomal large subunit pseudouridine synthase D.
  
    0.701
OCL92207.1
GTP cyclohydrolase 1 type 2.
  
    0.700
purE
N5-carboxyaminoimidazole ribonucleotide mutase; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
       0.696
OCL92208.1
Putative zinc ribbon domain protein.
       0.696
OCL92205.1
Glutaredoxin.
       0.684
hemN_2
Oxygen-independent coproporphyrinogen-III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
    0.596
recN
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
   
   0.514
Your Current Organism:
Arcobacter thereius
NCBI taxonomy Id: 544718
Other names: A. thereius, Aliiarcobacter thereius, Arcobacter sp. 16389, Arcobacter sp. 16695-3, Arcobacter sp. R-36845, Arcobacter sp. R-36855, Arcobacter thereius Houf et al. 2009, CCUG 56902, DSM 23385, LMG 24486, LMG:24486, strain 16389
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