STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cyf_1Cytochrome c-553 precursor. (140 aa)    
Predicted Functional Partners:
nroR
NADH-rubredoxin oxidoreductase.
   
 0.767
fccB
Sulfide dehydrogenase [flavocytochrome c] flavoprotein chain precursor.
   
 0.767
clpS
ATP-dependent Clp protease adapter protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
       0.746
clpA
ATP-dependent Clp protease ATP-binding subunit ClpA; Belongs to the ClpA/ClpB family.
       0.746
OCL92113.1
Cytochrome C oxidase, mono-heme subunit/FixO.
  
 0.655
OCL94026.1
Cytochrome c5.
  
 
 0.645
OCL92112.1
Hypothetical protein; Cytochrome c oxidase subunit 1 homolog, bacteroid; Belongs to the heme-copper respiratory oxidase family.
  
 0.607
bioD
ATP-dependent dethiobiotin synthetase BioD; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
       0.535
ccsA
Cytochrome c biogenesis protein CcsA.
     
 0.475
Your Current Organism:
Arcobacter thereius
NCBI taxonomy Id: 544718
Other names: A. thereius, Aliiarcobacter thereius, Arcobacter sp. 16389, Arcobacter sp. 16695-3, Arcobacter sp. R-36845, Arcobacter sp. R-36855, Arcobacter thereius Houf et al. 2009, CCUG 56902, DSM 23385, LMG 24486, LMG:24486, strain 16389
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