STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY84780.1Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)    
Predicted Functional Partners:
APY84779.1
RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.999
APY87710.1
RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.994
APY89775.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.984
APY84781.1
Molybdopterin-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.788
APY84782.1
Fasciclin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.721
APY86784.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.581
APY89241.1
RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.534
APY88044.1
RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.477
APY90298.1
RNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.477
A7J05_00110
Transposase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.469
Your Current Organism:
Streptomyces silaceus
NCBI taxonomy Id: 545123
Other names: DSM 41861, LDDC 6638-99, NRRL B-24166, S. silaceus, Streptomyces silaceus Labeda et al. 2009, Streptomyces sp. NRRL B-24166
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.