STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY85182.1Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (461 aa)    
Predicted Functional Partners:
APY88360.1
Glutamate 5-kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.923
APY90839.1
Ornithine--oxo-acid transaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.919
APY86205.1
1-pyrroline-5-carboxylate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.912
APY89231.1
Acetylglutamate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.906
APY91252.1
Ornithine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.902
APY89229.1
N-acetyl-gamma-glutamyl-phosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.891
APY89230.1
Bifunctional ornithine acetyltransferase/N-acetylglutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.880
A7J05_29220
Pyridoxamine 5'-phosphate oxidase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.865
APY85187.1
Squalene-hopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.858
APY85852.1
Ornithine carbamoyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.857
Your Current Organism:
Streptomyces silaceus
NCBI taxonomy Id: 545123
Other names: DSM 41861, LDDC 6638-99, NRRL B-24166, S. silaceus, Streptomyces silaceus Labeda et al. 2009, Streptomyces sp. NRRL B-24166
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.