STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY85879.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (484 aa)    
Predicted Functional Partners:
APY85880.1
1-deoxypentalenic acid 11-beta-hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.793
APY90041.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.732
APY88566.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.711
APY89900.1
MFS transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.668
APY85876.1
Dimethylallyltranstransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.632
APY88407.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.562
APY88436.1
tRNA-dihydrouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.562
APY85878.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.547
APY90733.1
Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.536
APY85877.1
Taurine catabolism dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.467
Your Current Organism:
Streptomyces silaceus
NCBI taxonomy Id: 545123
Other names: DSM 41861, LDDC 6638-99, NRRL B-24166, S. silaceus, Streptomyces silaceus Labeda et al. 2009, Streptomyces sp. NRRL B-24166
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.